Databases available for BLAST search


Nucleotide Sequence Databases


haruna_transcripts
all genes predicted by FLcDNA mapping and RNA-Seq on Haruna Nijo genome.

haruna_protein
all proteins based on "haruna_transcripts".

EST_FLcDNA
All ESTs that were either 5'- or 3'- end sequences of NIAS FLcDNA clones.

contigs_singlets.fasta
Contig sequences derived from the EST clustering by sequence similarity.

fllLength_RedundantAll
All FLcDNAs from Okayama Univ. (Sato et al. 2009) and NIAS (Matsumoto et al. 2011).

fllLength_All
Non-redundant FLcDNAs from Okayama Univ. (Sato et al. 2009) and NIAS (Matsumoto et al. 2011).

fullLength_fromOKAYAMA
All FLcDNAs from Okayama Univ. (Sato et al. 2009).

fullLength_fromSTAFF
All FLcDNAs from NIAS (Matsumoto et al. 2011)

IBSC_morex_genome
Concatenated IBSC barley contig sequences (IBSC 2012).